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Journals & Proceedings

Thomas J. Ha, Douglas J. Swanson, Roumyana Kirova, Joanna Yeung, Kunho Choi, Yiai Tong, Elissa J. Chesler and Daniel Goldowitz.   Genome-wide microarray comparison reveals downstream genes of Pax6 in the developing mouse cerebellum. , Eu J Neurosci., 2012, In print: doi:10.1111/j.1460-9568.2012.08221

Tong Y, Ha TJ, Liu L, Nishimoto A, Reiner A, Goldowitz D.   Spatial and temporal requirements for huntingtin (Htt) in neuronal migration and survival during brain development, J Neurosci., 2011 Oct 12;31(41):14794-9

Swanson DJ, Goldowitz D.  Experimental Sey mouse chimeras reveal the developmental deficiencies of Pax6-null granule cells in the postnatal cerebellum. , Dev Biol. , Epub 2010 Nov 29.

Heinrich KE, Berry MW and Homayouni R.  Gene Tree Labeling Using Nonnegative Matrix Factorization on Biomedical Literature, Computational Intelligence and Neuroscience, Volume 2008, Article ID 276535

Tjioe E, Berry M, and Homayouni R.  Using a Literature-based NMF Model for Discovering Gene Functional Relationships, Proceedings of the First Workshop on Data Mining in Functional Genomics, IEEE International Conference on Bioinformatics and Biomedicine, Philadelphia, PA, Nov. 3-5, 2008, pp. 185-192.

Langston MA, Perkins AD, Saxton AM, Scharff JA, and Voy BH. Innovative computational methods for transcriptomic data analysis, The Computer Journal, 2008, 51(1):26-38.

Heinrich KE.  Automated Gene Classification using Nonnegative Matrix Factorization on Biomedical Literature, Ph.D. Dissertation, 2007, University of Tennessee.

Bao L, Peirce JL, Zhou M, Li H, Goldowitz D, Williams RW, Lu L and Cui Y.  An integrative genomics strategy for systematic characterization of genetic loci modulating phenotypes, Human Molecular Genetics, 2007 Jun 1;16(11):1381-90.

Voy BH, Scharff JA, Perkins AD, Saxton AM, Borate B, Chesler EJ, Branstetter LK and Langston MA.  Extracting gene networks for low dose radiation using graph theoretical algorithms, PLoS Computational Biology, vol. 2 (7), 2006, e89.

Kirova R, Langston MA, Peng X, Perkins AD,  and Chesler EJ, A systems genetic analysis of chronic fatigue syndrome: combinatorial data integration from SNPs to differential diagnosis of disease, Proceedings, International Conference for the Critical Assessment of Microarray Data Analysis (CAMDA), Durham, North Carolina, 2006.

Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL and Samatova NF.  Detecting differential and correlated protein expression in label-free shotgun proteomics, Journal of Proteome Research, vol. 5, 2006, 2909-2918.

Abu-Khzam FN, Langston MA, Shanbhag P and Symons CT.  Scalable parallel algorithms for FPT problems, Algorithmica, 2006, vol. 45, 269-284.

Bao L, Wei L, Peirce JL, Homayouni R, Li H, Zhou M, Chen H, Lu L, Williams RW, Pfeffer LM, Goldowitz D and Cui Y.  Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relations, Mammalian Genome, 2006, 17:575-583.

Bao L, Zhou M, Wu L, Lu L, Goldowitz D, Williams RW and Cui Y.  PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits, Nucleic Acids Research, ,2006, 35: D51-D54.

Li H, Chen H, Bao L, Manly KF, Chesler EJ, Lu L, Wang J, Zhou M, Williams RW and Cui Y.  Integrative Genetic Analysis of Transcription Modules: Towards Filling the Gap between Genetic Loci and Inherited Traits, Human Molecular Genetics, 2005,  15:481-492.

Homayouni R, Heinrich KE, Wei L and Berry MW.  Gene clustering by Latent Semantic Indexing of MEDLINE abstracts, Bioinformatics, 2005 21(1):104-115.

Goldowitz D, Hamre K..   The cells and molecules that make a cerebellum., Trends Neurosci., 1998 Sep;21(9):375-82. Review.

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